PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929827.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 430aa    MW: 47051.1 Da    PI: 8.8541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929827.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-092147127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C ++ rtG C++G +CkF+H+p
  XP_010929827.1 21 PGEADCGYYIRTGLCRFGMTCKFNHPP 47
                    57899********************97 PP

2zf-CCCH39.31.1e-126892327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C+++++tGtCk+G++CkF+H++
  XP_010929827.1 68 QPECQYYLKTGTCKFGATCKFHHPK 92
                    799********************96 PP

3zf-CCCH33.66.8e-11114138327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++ rtG+Ck+G++CkF+H++
  XP_010929827.1 114 EKECAYYIRTGQCKFGNTCKFHHPQ 138
                     679********************97 PP

4zf-CCCH39.31.1e-12274299227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  XP_010929827.1 274 DQPECQFYMKTGDCKFGAVCKFHHPR 299
                     689*********************96 PP

5zf-CCCH38.12.6e-12319345127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010929827.1 319 PGEPLCVFYSRYGICKFGPNCKFDHPM 345
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00162047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7652048IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-62247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-52448IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-66592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3386593IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-57191IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-4111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6111139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953111139IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-8114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53272300IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6275302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5278300IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-8318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953318346IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6321346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4323343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MWQMNLRGSE SMESGPYPER PGEADCGYYI RTGLCRFGMT CKFNHPPNRR LAIAAARIKG  60
GYPERVGQPE CQYYLKTGTC KFGATCKFHH PKDKAGIAGR VQLNILGYPL RPNEKECAYY  120
IRTGQCKFGN TCKFHHPQPS NAMVALRGSP VYPPVHSSTT PGQQSYPGGL TNWSLSRTSF  180
IPSPRWQDPS SYTQLILPQG LVQVPGWNPY PGQMGSSSPD SQQQTPGAAQ YYSTTHQSET  240
SAGAQGTFSS YRPGSIPMGV YALQRENIFP ERPDQPECQF YMKTGDCKFG AVCKFHHPRE  300
RLVPVPNCLL SPLGLPLRPG EPLCVFYSRY GICKFGPNCK FDHPMGTFTY GISTSSTADV  360
PTVRRLIGSS SGPPALTSSS EGPADAGMGK PRDSRRLSLS ESRQIGTGDE NLEAEASHTS  420
SSIGQVSSFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929825.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLW1PQQ60.0W1PQQ6_AMBTC; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-158zinc finger protein 1